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Image Search Results
Journal: Nature Communications
Article Title: DeepRTAlign: toward accurate retention time alignment for large cohort mass spectrometry data analysis
doi: 10.1038/s41467-023-43909-5
Figure Lengend Snippet: a , c The precisions and recalls of MZmine 2 and DeepRTAlign on different test sets. b , d The precisions and recalls of OpenMS and DeepRTAlign on different test datasets. “FE” means the feature extraction method. “A” means the RT alignment method. We took the Mascot identification results with FDR < 1% as the ground truth in datasets HCC-N, UPS2-M and UPS2-Y and took the MaxQuant identification results with FDR < 1% as the ground truth in datasets EC-H and AT. In dataset EC-H, we only considered the E. coli peptides for evaluation. In datasets UPS2-M and UPS2-Y, we only considered the UPS2 peptides for evaluation. Source data are provided as a file.
Article Snippet:
Techniques: Extraction
Journal: Nature Communications
Article Title: DeepRTAlign: toward accurate retention time alignment for large cohort mass spectrometry data analysis
doi: 10.1038/s41467-023-43909-5
Figure Lengend Snippet: a – c The E. coli peptide number in each sample after alignment. d – f The ratio distributions of all E. coli peptides between specific samples (15 ng/10 ng, 20 ng/10 ng, and 25 ng/10 ng). The numbers 1, 2 and 3 in the legends indicate feature extraction method, alignment method and identification method, respectively. In all boxplots, the center red line is the median of log2 of the peptide fold changes. The box limits are the upper and lower quartiles. The whiskers extend to 1.5 times the size of the interquartile range. Source data are provided as a file.
Article Snippet:
Techniques: Extraction